PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 48162
Common NameMICPUCDRAFT_48162
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Mamiellaceae; Micromonas; Micromonas pusilla
Family HSF
Protein Properties Length: 284aa    MW: 32332 Da    PI: 10.0207
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
48162genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind66.65.7e-21261232102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHH...THHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
  HSF_DNA-bind   2 Flkklyeiledeelkeliswsengnsfvvldeeefakk...vLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                   F++kl+++++d++ ++++sw+++g+sfvv+d + f+kk   vLp +    n++ F R Ln YgF+k+ ++++         eF+h+ F kg+   l+
         48162  26 FIMKLHTLVSDPSASDVVSWNKDGKSFVVKDAKAFEKKlvgVLPVFPARVNINGFKRELNNYGFHKLGNDDDA------RLEFSHDGFVKGDPAALR 116
                   9************************************9444577788899******************99976......89**************** PP

                   XXXXXXX CS
  HSF_DNA-bind  96 kikrkks 102
                   ++ +k++
         48162 117 QVTQKAN 123
                   *999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.8E-2422121IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.4E-2322120IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.18E-1923119IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.5E-2126121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-82649IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.6E-88092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MAPTHLHARR PSCNPYAFDR VKVSPFIMKL HTLVSDPSAS DVVSWNKDGK SFVVKDAKAF  60
EKKLVGVLPV FPARVNINGF KRELNNYGFH KLGNDDDARL EFSHDGFVKG DPAALRQVTQ  120
KANVGRFRRE KPQTAAKDMA PVSGFVLKNP FSLADNNNFG RFRRDADWEE KAFNPFDLEN  180
NNNYGRFRRG AKETDVAAAE DMAPVSGFDW KNPFSLADNN NFGRFRRDAN WEEKAFNPFD  240
LADNNNYGRF RRDANWEENA VNPFDLTDNR NYGRFRRAVQ PAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A1e-13231214106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A1e-13231214106HEAT-SHOCK TRANSCRIPTION FACTOR
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003061318.10.0heat shock transcription factor
TrEMBLC1N0180.0C1N018_MICPC; Heat shock transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1538222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.13e-15heat shock transcription factor B2A
Publications ? help Back to Top
  1. Worden AZ, et al.
    Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas.
    Science, 2009. 324(5924): p. 268-72
    [PMID:19359590]